Files in reptalex/phylofactor

phylofactor

R/BalanceContrast.R R/GAM.R R/HGTplot.R R/OTUtoTaxa.R R/PhyCA.R R/PhyloFactor.R R/PhyloRegression.R R/TaxaSplit.R R/VAR.R R/amalgamate.R R/bins.R R/clo.R R/crossVmap.R R/data.R R/extractEdges.R R/findInterruptions.R R/findWinner.R R/findunsplitgroups.R R/gMean.R R/getAssignedGroups.R R/getFactoredEdges.R R/getFactoredEdgesPAR.R R/getLabelledGrp.R R/getNewGroups.R R/getObjective.R R/getPhyloGroups.R R/getSignal.R R/getStats.R R/gpf.R R/ilrInv.R R/ilrvec.R R/listTaxa.R R/mAggregation.R R/matrix.to.phyloframe.R R/pf.BINprojection.R R/pf.ILRprojection.R R/pf.crossValidateMap.R R/pf.flow.R R/pf.getPhyloGroups.R R/pf.groupsTospecies.R R/pf.heatmap.R R/pf.nullsim.R R/pf.plot.R R/pf.predict.R R/pf.resume.R R/pf.summary.R R/pf.taxa.R R/pf.tidy.R R/pf.tree.R R/pglm.R R/phyca.tidy.R R/phyloFcluster.R R/phyloFrame.R R/phylobin.R R/phyloframe.to.matrix.R R/predict.phylofactor.R R/print.phylofactor.R R/print.phylofactor.summary.R R/pvDeviance.R R/simHGT.R R/summary.phylofactor.R R/taxaTree.R R/twoSampleFactor.R R/uniqueTaxa.R R/updateBinList.R R/updateTreeList.R R/whichBinSplit.R README.md Rplots.pdf inst/tests/testthat.R inst/tests/testthat/test-10twoSampleFactor.R inst/tests/testthat/test-11gpf.R inst/tests/testthat/test-1phylofactor.R inst/tests/testthat/test-2phylofactor-multiple-regression.R inst/tests/testthat/test-3phylofactor-custom-objective-functions.R inst/tests/testthat/test-4phylofactor-SitePrediction-binomial-regression.R inst/tests/testthat/test-5phyca.R inst/tests/testthat/test-6getFactoredEdges.R inst/tests/testthat/test-7crossVmap.R inst/tests/testthat/test-8pfnullsim.R inst/tests/testthat/test-9pfplotting.R man/BalanceContrast.Rd man/FTmicrobiome.Rd man/GAM.Rd man/HGTplot.Rd man/OTUtoTaxa.Rd man/PhyCA.Rd man/PhyloFactor.Rd man/PhyloRegression.Rd man/TaxaSplit.Rd man/VAR.Rd man/amalgamate.Rd man/bins.Rd man/clo.Rd man/crossVmap.Rd man/extractEdges.Rd man/find.unsplit.Grps.Rd man/findInterruptions.Rd man/findWinner.Rd man/gMean.Rd man/getAssignedGroups.Rd man/getFactoredEdges.Rd man/getFactoredEdgesPAR.Rd man/getLabelledGrp.Rd man/getNewGroups.Rd man/getObjective.Rd man/getPhyloGroups.Rd man/getSignal.Rd man/getStats.Rd man/gpf.Rd man/ilrInv.Rd man/ilrvec.Rd man/listTaxa.Rd man/mAggregation.Rd man/matrix.to.phyloframe.Rd man/pf.BINprojection.Rd man/pf.ILRprojection.Rd man/pf.crossValidateMap.Rd man/pf.flow.Rd man/pf.getPhyloGroups.Rd man/pf.groupsTospecies.Rd man/pf.heatmap.Rd man/pf.nullsim.Rd man/pf.plot.Rd man/pf.predict.Rd man/pf.resume.Rd man/pf.summary.Rd man/pf.taxa.Rd man/pf.tidy.Rd man/pf.tree.Rd man/pglm.Rd man/phyca.tidy.Rd man/phyloFcluster.Rd man/phyloFrame.Rd man/phylobin.Rd man/phyloframe.to.matrix.Rd man/predict.phylofactor.Rd man/print.phylofactor.Rd man/print.phylofactor.summary.Rd man/pvDeviance.Rd man/simHGT.Rd man/summary.phylofactor.Rd man/taxaTree.Rd man/twoSampleFactor.Rd man/uniqueTaxa.Rd man/updateBinList.Rd man/updateTreeList.Rd man/whichBinSplit.Rd