Files in schalkwyk/wateRmelon
Illumina 450 and EPIC methylation array normalization and metrics
DESCRIPTION
NAMESPACE
R/AllGenerics.R
R/BMIQ_1.1.R
R/Beta2M.R
R/M2Beta.R
R/adaptRefQuantiles.R
R/adjustedDasen.R
R/adjustedFunnorm.R
R/as.methylumi.R
R/beta1.R
R/betaqn.R
R/bgeq.R
R/bgeqot.R
R/bgeqq2.R
R/bgeqqn.R
R/bscon.R
R/bscon_methy.R
R/bscon_minfi.R
R/coRankedMatrices.R
R/combo.R
R/concatenateMatrices.R
R/correctI.R
R/correctII.R
R/createAnnotation.R
R/dataDetectPval2NA.R
R/db1.R
R/detectionPval.filter.R
R/dfs2.R
R/dfsfit.R
R/dmrse.R
R/dmrse_col.R
R/dmrse_row.R
R/dyebuy1.R
R/dyebuy2.R
R/dyebuy3.R
R/dyebuy4.R
R/estimateCellCounts.R
R/estimateSex.R
R/filterXY.R
R/findAnnotationProbes.R
R/gcoms.R
R/gcose.R
R/genki.R
R/genkme.R
R/genkus.R
R/genotype.R
R/getAnn.R
R/getMethylumiBeta.R
R/getQuantiles.R
R/getSamples.R
R/getsnp.R
R/horv.R
R/loadMethylumi2.R
R/lumiMethyR2.R
R/manifesto.R
R/melon.R
R/nbBeadsFilter.R
R/normalize.quantiles2.R
R/normalizeIlluminaMethylation.R
R/ot.R
R/outlyx.R
R/oxyscale.R
R/pasteque.R
R/peak.correction.R
R/pfilter.R
R/pipelineIlluminaMethylation.batch.R
R/preprocessIlluminaMethylation.R
R/pwod.R
R/qual.R
R/readAny.R
R/readEPIC.R
R/referenceQuantiles.R
R/robustQuantileNorm_Illumina450K.R
R/robustQuantileNorm_Illumina450K.probeCategories.R
R/seabird.R
R/sextest.R
R/smokp.R
R/summits.R
R/swan2.R
R/uSexQN.R
R/uniqueAnnotationCategory.R
R/x_methylumi.R
R/y_minfi.R
R/z_bigmelon.R
README.md
data/age_coefficients.rda
data/coef.rda
data/datalist
data/epic.controls.rda
data/epicV2.controls.rda
data/hannumCoef.rda
data/iDMR.rda
data/melon.rda
data/sexCoef.rda
data/smokp_cpgs.rda
inst/CITATION
man/BMIQ.Rd
man/Beta2M.Rd
man/adaptRefQuantiles.Rd
man/adjustedDasen.Rd
man/adjustedFunnorm.Rd
man/agep.Rd
man/as.methylumi-methods.Rd
man/beadc.Rd
man/beadcount.Rd
man/bscon.Rd
man/canno.Rd
man/colnames-methods.Rd
man/combo.Rd
man/dasen-MethyLumiSet.Rd
man/dasen-MethySet.Rd
man/dasen-exprmethy450.Rd
man/dasen.Rd
man/db1.Rd
man/dmrse-methods.Rd
man/dmrse.Rd
man/dot-createAnnotation.Rd
man/dot-getManifestString.Rd
man/epicv2clean.default.Rd
man/estimateCellCounts.wmln.rd
man/estimateSex.Rd
man/genki-methods.Rd
man/genki.Rd
man/genkme.Rd
man/got.Rd
man/iDMR.Rd
man/idet.Rd
man/melon.Rd
man/metrics.Rd
man/outlyx-methods.Rd
man/outlyx.Rd
man/pfilter.Rd
man/pwod-methods.Rd
man/pwod.Rd
man/qual.Rd
man/read.manifest.Rd
man/readEPIC.Rd
man/readPepo.Rd
man/seabi-methods.Rd
man/seabi.Rd
man/seabird.Rd
man/sextest.Rd
man/smokp.Rd
man/wateRmelon-package.Rd
man/wm_internal.Rd
vignettes/references.bib
vignettes/wateRmelon.Rmd
