melon: Small MethyLumi data set for examples and testing

Description Usage Format Source Examples

Description

This object was derived using methylumiR on an edited GenomeStudio file containing a small subset of features. It works with all of the wateRmelon package beta functions (see dasen and metrics (see genki, seabi, and dmrse_col) except for swan.

Usage

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Format

MethyLumiSet with assayData containing 3363 features, 12 samples

Source

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)

Examples

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library(methylumi)
data(melon)
boxplot(log(methylated(melon)), las=2)
## maybe str(melon) ; plot(melon) ...

schalkwyk/wateRmelon documentation built on Oct. 27, 2018, 3:26 a.m.