melon: Small MethyLumi data set for examples and testing
In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics
melon R Documentation
Small MethyLumi data set for examples and testing
Description
This object was derived using methylumiR on an
edited GenomeStudio file containing a small subset of features.
It works with all of the wateRmelon package beta functions
(see dasen and metrics (see genki, seabi, and dmrse_col) except for swan.
Usage
data(melon)
Format
MethyLumiSet with assayData containing 3363 features, 12 samples
Source
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation
array data (submitted)
Examples
library(methylumi)
data(melon)
boxplot(log(methylated(melon)), las=2)
## maybe str(melon) ; plot(melon) ...
schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.
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| melon | R Documentation |
Small MethyLumi data set for examples and testing
Description
This object was derived using methylumiR on an
edited GenomeStudio file containing a small subset of features.
It works with all of the wateRmelon package beta functions
(see dasen and metrics (see genki, seabi, and dmrse_col) except for swan.
Usage
data(melon)Format
MethyLumiSet with assayData containing 3363 features, 12 samples
Source
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
Examples
library(methylumi)
data(melon)
boxplot(log(methylated(melon)), las=2)
## maybe str(melon) ; plot(melon) ...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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