melon: Small MethyLumi data set for examples and testing

melonR Documentation

Small MethyLumi data set for examples and testing

Description

This object was derived using methylumiR on an edited GenomeStudio file containing a small subset of features. It works with all of the wateRmelon package beta functions (see dasen and metrics (see genki, seabi, and dmrse_col) except for swan.

Usage

data(melon)

Format

MethyLumiSet with assayData containing 3363 features, 12 samples

Source

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)

Examples

library(methylumi)
data(melon)
boxplot(log(methylated(melon)), las=2)
## maybe str(melon) ; plot(melon) ...

schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.