dot-getManifestString: Internal functions for Illumina i450 normalization functions
In schalkwyk/wateRmelon: Illumina 450 and EPIC methylation array normalization and metrics
.getManifestString R Documentation
Internal functions for Illumina i450 normalization functions
Description
got and fot find the annotation column differentiating type I and type II
assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts
columns from IlluminaHumanMethylation450k.db
Usage
.getManifestString(annotation)
Arguments
x
a MethyLumiSet
obj
a MethylSet
fd
a character vector of the desired annotation columns
rn
a character vector of the desired features
Details
got returns a character vector of 'I' and 'II', fot returns
the index of the relevant column. pop returns a data frame
Author(s)
lschal@essex.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A
data-driven approach to preprocessing Illumina 450K methylation array data
(submitted)
schalkwyk/wateRmelon documentation built on April 15, 2024, 12:06 p.m.
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| .getManifestString | R Documentation |
Internal functions for Illumina i450 normalization functions
Description
got and fot find the annotation column differentiating type I and type II assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns from IlluminaHumanMethylation450k.db
Usage
.getManifestString(annotation)
Arguments
x |
a MethyLumiSet |
obj |
a MethylSet |
fd |
a character vector of the desired annotation columns |
rn |
a character vector of the desired features |
Details
got returns a character vector of 'I' and 'II', fot returns
the index of the relevant column. pop returns a data frame
Author(s)
lschal@essex.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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