dot-getManifestString: Internal functions for Illumina i450 normalization functions

In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics

Internal functions for Illumina i450 normalization functions

Description

got and fot find the annotation column differentiating type I and type II assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns from IlluminaHumanMethylation450k.db

Usage

.getManifestString(annotation)

Arguments

annotation	A string naming the array type
x	a MethyLumiSet
obj	a MethylSet
fd	a character vector of the desired annotation columns
rn	a character vector of the desired features

Details

got returns a character vector of 'I' and 'II', fot returns the index of the relevant column. pop returns a data frame

Author(s)

[e-mail]

References

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)

schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.