seabird: Calculate ROC area-under-curve for X-chromosome sex...
In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics
seabird R Documentation
Calculate ROC area-under-curve for X-chromosome sex differences (internal function for calculating the seabi metric)
Description
This is a wrapper for the prediction and performance functions from
the ROCR package that takes a vector of p-values and a vector of true
or false for being on the X. See seabi function which does everything.
Usage
seabird(pr, stop = 1, X)
Arguments
pr
a vector of p-values, such as calculated by seabird
stop
fraction for partial area under curve. For example 0.1 gives you the
area for the lowest 10% of p-values.
X
logical vector the same length as pv, true for features mapped to X-chromosome
Value
Returns an area value between 0 and 1, where 1 is the best possible performance.
Author(s)
Leonard C Schalkwyk 2012
Leonard.Schalkwyk@kcl.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation
array data (submitted)
schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.
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| seabird | R Documentation |
Calculate ROC area-under-curve for X-chromosome sex differences (internal function for calculating the seabi metric)
Description
This is a wrapper for the prediction and performance functions from
the ROCR package that takes a vector of p-values and a vector of true
or false for being on the X. See seabi function which does everything.
Usage
seabird(pr, stop = 1, X)
Arguments
pr |
a vector of p-values, such as calculated by |
stop |
fraction for partial area under curve. For example 0.1 gives you the area for the lowest 10% of p-values. |
X |
logical vector the same length as pv, true for features mapped to X-chromosome |
Value
Returns an area value between 0 and 1, where 1 is the best possible performance.
Author(s)
Leonard C Schalkwyk 2012 Leonard.Schalkwyk@kcl.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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