beadcount: Creates matrix of beacounts from minfi data.
In schalkwyk/wateRmelon: Illumina 450 and EPIC methylation array normalization and metrics
beadcount R Documentation
Creates matrix of beacounts from minfi data.
Description
Creates matrix of beacounts from data read in using the minfi package. NAs represent probes with beadcount <3. An Extended RG Channel Set is required for this function to work.
Usage
beadcount(x)
Arguments
x
450K methylation data read in using minfi to create an Extended RG Channel Set
Value
A matrix of bead counts with bead counts <3 represented by NA for use in the pfilter function for quality control
Note
The beadcount function is internal to the pfilter function
Author(s)
Ruth.Pidsley@kcl.ac.uk
References
[1] Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation
array data (submitted)
schalkwyk/wateRmelon documentation built on April 15, 2024, 12:06 p.m.
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| beadcount | R Documentation |
Creates matrix of beacounts from minfi data.
Description
Creates matrix of beacounts from data read in using the minfi package. NAs represent probes with beadcount <3. An Extended RG Channel Set is required for this function to work.
Usage
beadcount(x)
Arguments
x |
450K methylation data read in using minfi to create an Extended RG Channel Set |
Value
A matrix of bead counts with bead counts <3 represented by NA for use in the pfilter function for quality control
Note
The beadcount function is internal to the pfilter function
Author(s)
Ruth.Pidsley@kcl.ac.uk
References
[1] Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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