got: Internal functions for Illumina i450 normalization functions

Description Usage Arguments Details Author(s) References

View source: R/y_minfi.R

Description

got and fot find the annotation column differentiating type I and type II assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns from IlluminaHumanMethylation450k.db

Usage

1
2
got(obj)
fot(x)

Arguments

x

a MethyLumiSet

obj

a MethylSet

Details

got returns a character vector of 'I' and 'II', fot returns the index of the relevant column. pop returns a data frame

Author(s)

[email protected]

References

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)


schalkwyk/wateRmelon documentation built on Oct. 27, 2018, 3:26 a.m.