got: Internal functions for Illumina i450 normalization functions
In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics
got R Documentation
Internal functions for Illumina i450 normalization functions
Description
got and fot find the annotation column differentiating type I and type II
assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns
from IlluminaHumanMethylation450k.db
Usage
got(obj)
fot(x)
Arguments
x
a MethyLumiSet
obj
a MethylSet
Details
got returns a character vector of 'I' and 'II', fot returns the index of the relevant column.
pop returns a data frame
Author(s)
Leonard.Schalkwyk@kcl.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation
array data (submitted)
schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.
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| got | R Documentation |
Internal functions for Illumina i450 normalization functions
Description
got and fot find the annotation column differentiating type I and type II assays in MethylSet (got) or MethyLumiSet (fot) objects. pop extracts columns from IlluminaHumanMethylation450k.db
Usage
got(obj)
fot(x)
Arguments
x |
a MethyLumiSet |
obj |
a MethylSet |
Details
got returns a character vector of 'I' and 'II', fot returns the index of the relevant column.
pop returns a data frame
Author(s)
Leonard.Schalkwyk@kcl.ac.uk
References
Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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