epicv2clean.default: Strip and subset EPICv2 data to work with legacy data and...
In schalkwyk/wateRmelon: Illumina 450 and EPIC methylation array normalization and metrics
epicv2clean.default R Documentation
Strip and subset EPICv2 data to work with legacy data and methods
Description
Returns an object with rownames stripped of the EPICv2 suffixes, duplicate probes are omitted.
Usage
## Default S3 method:
epicv2clean(x)
Details
EPICv2 manifests contain a few thousand probes with up to 10 replicate syntheses.
To accomodate this a modified naming scheme is used, so none of the probe names match
those on the EPIC and previous arrays (even though most of the probes are the same sequence
and presumably similar performance).
This simple function relies on the rowname and subsetting methods and will work for matrix,
dataframe, MethyLumiSet, or MethylSet objects, and there is a method for gds (bigmelon) objects.
schalkwyk/wateRmelon documentation built on April 15, 2024, 12:06 p.m.
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| epicv2clean.default | R Documentation |
Strip and subset EPICv2 data to work with legacy data and methods
Description
Returns an object with rownames stripped of the EPICv2 suffixes, duplicate probes are omitted.
Usage
## Default S3 method:
epicv2clean(x)
Details
EPICv2 manifests contain a few thousand probes with up to 10 replicate syntheses. To accomodate this a modified naming scheme is used, so none of the probe names match those on the EPIC and previous arrays (even though most of the probes are the same sequence and presumably similar performance).
This simple function relies on the rowname and subsetting methods and will work for matrix, dataframe, MethyLumiSet, or MethylSet objects, and there is a method for gds (bigmelon) objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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