genkme: Internal functions for genotype-based normalization metrics

Description Usage Arguments Details Value Author(s) References

View source: R/genkme.R

Description

genkme - genotype calling with 1d k-means

genkus - apply genkme to available SNPs

getsnp - grep the rs-numbered probes

gcose - calculate between-sample SNP standard error

gcoms - calculate between-sample SNP mean-squared deviation

Usage

1
genkme(y, peaks = c(0.2, 0.5, 0.8))

Arguments

y

a vector or matrix of numeric values (betas, between 0 and 1)

peaks

initial values for cluster positions

Details

see genki

Value

see genki

Author(s)

[email protected]

References

Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data (submitted)


schalkwyk/wateRmelon documentation built on Oct. 27, 2018, 3:26 a.m.