estimateSex: Predict sex by using robust sex-related CpG sites on ChrX and...
In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics
estimateSex R Documentation
Predict sex by using robust sex-related CpG sites on ChrX and ChrY
Description
Predict sex by using robust sex-related CpG sites on ChrX and ChrY
Usage
estimateSex(betas, do_plot = FALSE)
Arguments
betas
A matrix with sample IDs as column names, and probe names as row names,
ideally: beta = M / (M + U + 100). Take a look at an example betas with:
"data(melon); print(betas(melon)[1:10, 1:3])".
do_plot
logical. Should plot the predicted results? Default: FALSE
Value
dataframe contains predicted sex information.
Author(s)
Wang, Yucheng, et al. "DNA methylation-based sex classifier to predict sex
and identify sex chromosome aneuploidy." BMC genomics 22.1 (2021): 1-11.
Examples
data(melon)
pred_XY <- estimateSex(betas(melon), do_plot=TRUE)
schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.
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| estimateSex | R Documentation |
Predict sex by using robust sex-related CpG sites on ChrX and ChrY
Description
Predict sex by using robust sex-related CpG sites on ChrX and ChrY
Usage
estimateSex(betas, do_plot = FALSE)
Arguments
betas |
A matrix with sample IDs as column names, and probe names as row names, ideally: beta = M / (M + U + 100). Take a look at an example betas with: "data(melon); print(betas(melon)[1:10, 1:3])". |
do_plot |
logical. Should plot the predicted results? Default: FALSE |
Value
dataframe contains predicted sex information.
Author(s)
Wang, Yucheng, et al. "DNA methylation-based sex classifier to predict sex and identify sex chromosome aneuploidy." BMC genomics 22.1 (2021): 1-11.
Examples
data(melon)
pred_XY <- estimateSex(betas(melon), do_plot=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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