qual: A measure of Normalization Violence
In schalkwyk/wateRmelon: Illumina DNA methylation array normalization and metrics
qual R Documentation
A measure of Normalization Violence
Description
Calculates 4 metrics to assess the degree of difference between normalized and raw betas.
Usage
qual(norm,raw)
Arguments
norm
Matrix of normalized betas
raw
Matrix of raw betas
Value
Returns data.frame containing rmsd, sdd, sadd and srms for each sample (columns) in supplied matrices.
Author(s)
Leo Schalkwyk
Examples
library(wateRmelon)
data(melon)
d.melon <- dasen(melon)
raw.bet <- betas(melon)
norm.bet <- betas(d.melon)
qual(norm=norm.bet, raw=raw.bet)
schalkwyk/wateRmelon documentation built on Aug. 13, 2024, 9:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| qual | R Documentation |
A measure of Normalization Violence
Description
Calculates 4 metrics to assess the degree of difference between normalized and raw betas.
Usage
qual(norm,raw)
Arguments
norm |
Matrix of normalized betas |
raw |
Matrix of raw betas |
Value
Returns data.frame containing rmsd, sdd, sadd and srms for each sample (columns) in supplied matrices.
Author(s)
Leo Schalkwyk
Examples
library(wateRmelon)
data(melon)
d.melon <- dasen(melon)
raw.bet <- betas(melon)
norm.bet <- betas(d.melon)
qual(norm=norm.bet, raw=raw.bet)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.