Files in smaegol/nanotail
Analysis and visualisation of Nanopolish-based polyA lengths estimations
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/nanotail-package.R
R/polya_annotate.R
R/polya_helper_functions.R
R/polya_plots.R
R/polya_shiny_app.R
R/polya_stats.R
R/read_polyA_data.R
R/utils-pipe.R
README.md
appveyor.yml
codecov.yml
inst/extdata/about.md
man/annotate_with_annotables.Rd
man/annotate_with_biomart.Rd
man/annotate_with_org_packages.Rd
man/calculate_diff_exp_binom.Rd
man/calculate_pca.Rd
man/calculate_polya_stats.Rd
man/calculate_scaling_vector_for_virutal_gel.Rd
man/dot-basic_aesthetics.Rd
man/dot-kruskal_polya.Rd
man/dot-polya_stats.Rd
man/get_nanopolish_processing_info.Rd
man/getmode.Rd
man/gm_mean.Rd
man/kruskal_polya.Rd
man/nanoTailApp.Rd
man/nanotail_ggplot2_theme.Rd
man/normalize_counts_to_depth.Rd
man/pipe.Rd
man/plot_MA.Rd
man/plot_annotations_comparison_boxplot.Rd
man/plot_counts_scatter.Rd
man/plot_nanopolish_qc.Rd
man/plot_polyA_PCA.Rd
man/plot_polya_boxplot.Rd
man/plot_polya_distribution.Rd
man/plot_polya_violin.Rd
man/plot_quantiles.Rd
man/plot_virtual_gel.Rd
man/plot_volcano.Rd
man/read_polya_multiple.Rd
man/read_polya_single.Rd
man/remove_failed_reads.Rd
man/spread_multiple.Rd
man/stat_median_line.Rd
man/subsample_table.Rd
man/summarize_polya.Rd
man/summarize_polya_per_transcript.Rd
screenshots/screenshot_differential_adenylation.png
screenshots/screenshot_differential_expression.png
screenshots/screenshot_global.png
screenshots/screenshot_qc.png
tests/testthat.R
tests/testthat/test-helper_functions.R
tests/testthat/test-polya_annotate.R
tests/testthat/test-polya_plots.R
tests/testthat/test-polya_stats.R
tests/testthat/test-read_polyA_data.R
tests/testthat/test-shiny_app.R
