dot-polya_stats: Calculates polyA statistics for single group of reads (for...

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Calculates polyA statistics for single group of reads (for single transcript)

Description

Calculates polyA statistics for single group of reads (for single transcript)

Usage

.polya_stats(
  polya_data,
  stat_test,
  grouping_factor,
  min_reads = 0,
  use_dwell_time = FALSE,
  custom_glm_formula = NA
)

Arguments

polya_data	input data frame with polyA predictions
stat_test	statistical test to use. One of : Wilcoxon, KS (Kolmogorov-Smirnov) or glm (Generalized Linear Model). All tests use log2(polya_length) as a response variable
grouping_factor	factor defining groups (Need to have 2 levels)
min_reads	minimum reads per group to include in the statistics calculation
use_dwell_time	use dwell time instead of calculated polya length for statistics
custom_glm_formula	custom glm formula (when using glm for statistics)

Value

data frame

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.