summarize_polya: Summarizes input polya table

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Summarizes input polya table

Description

Summarizes input table with polyA predictions, calculating medians, mean, geometric means and standard deviation values for each transcript (default). To get overall summary for each sample or group, specify transcript_id_column=NULL

Usage

summarize_polya(
  polya_data,
  summary_factors = c("group"),
  transcript_id_column = c("transcript")
)

Arguments

polya_data	input table with polyA predictions
summary_factors	specifies column used for grouping (default: group)
transcript_id_column	specifies which column use as transcript identifier (default: transcript). Set to NULL to omit per-transcript stats

Value

long-format tibble with per-transcript statistics for each sample

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.