plot_polya_violin: Plots violin plot of estimated polya lengths, other version

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Plots violin plot of estimated polya lengths, other version

Description

Plots violin plot of estimated polya lengths, other version

Usage

plot_polya_violin(
  polya_data,
  groupingFactor,
  additional_grouping_factor = NA,
  condition1 = NA,
  condition2 = NA,
  violin = FALSE,
  add_points = FALSE,
  max_points = 500,
  add_boxplot = TRUE,
  fill_by = NA,
  auto_scale = T,
  transcript_id,
  transcript_id_column = "transcript",
  ...
)

Arguments

polya_data	input table with polyA predictions
groupingFactor	which factor to use for grouping
additional_grouping_factor	additional coloring grouping factor
condition1	First condition to include on the plot
condition2	Second condition to include on the plot
violin	Should violin plot be plotted instead of boxplot?
add_points	should individual points be plotted (only if less than max_points). Represented as geom_sina
max_points	maximum number of points to be plotted if add_points is specified
add_boxplot	Add boxplot inside violin?
...	parameters passed to .basic_aesthetics function (scale_x_limit_low = NA, scale_x_limit_high = NA, scale_y_limit_low = NA, scale_y_limit_high = NA, color_palette = "Set1",plot_title=NA)

Value

ggplot object

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.