read_polya_single: Read Single Nanopolish polyA preditions from file

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Read Single Nanopolish polyA preditions from file

Description

This is the basic function used to import output from nanopolish polya to R

Usage

read_polya_single(polya_path, gencode = TRUE, sample_name = NA)

Arguments

polya_path	path to nanopolish output file
gencode	are contig names GENCODE-compliant. Can get transcript names and ensembl_transcript IDs if reads were mapped for example to Gencode reference transcriptome
sample_name	sample name (optional), provided as a string. If specified will be included as an additional column sample_name.

Value

a tibble with polya predictions

See Also

read_polya_multiple

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.