kruskal_polya: Compute Kruskal-Wallis test on poly(A) data

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Compute Kruskal-Wallis test on poly(A) data

Description

Compute Kruskal-Wallis test on poly(A) data

Compute Kruskal-Wallis test on poly(A) data

Usage

kruskal_polya(
  input_data,
  grouping_factor = "sample_name",
  transcript_id = "transcript",
  verbose = F,
  verbosity_level = 1
)

kruskal_polya(
  input_data,
  grouping_factor = "sample_name",
  transcript_id = "transcript",
  verbose = F,
  verbosity_level = 1
)

Arguments

input_data	input tibble/data.frame with nanopolish output.
grouping_factor	which column contains group information
transcript_id	column which transcript ids
verbose	verbose output
verbosity_level	how verbose the output should be (levels 1 - little verbosity, or 2 - very verbose)

Value

data.frame with statistis

data.frame with statistis

Examples

## Not run: 
polya_table <- nanotail::read_polya_single("nanopolish.tsv")
kruskal_polya(polya_table,grouping_factor="group",transcript_id="transcript",verbose=T)

## End(Not run)
## Not run: 
polya_table <- nanotail::read_polya_single("nanopolish.tsv")
kruskal_polya(polya_table,grouping_factor="group",transcript_id="transcript",verbose=T)

## End(Not run)

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.