normalize_counts_to_depth: Normalize counts to sequencingdepth

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Normalize counts to sequencingdepth

Description

Normalize counts to sequencingdepth

Usage

normalize_counts_to_depth(
  summarized_data,
  raw_data,
  spike_in_data = NULL,
  groupBy,
  force = F
)

Arguments

summarized_data	output of summarize_polya_per_transcript()
raw_data	raw polyA data (loaded with read_polya_single() or read_polya_multiple())
spike_in_data	spike-in data for normalization (optional) (raw polya data loaded with read_polya_single() or read_polya_multiple(), with the same metadata as raw data)
groupBy	grouping variable
force	force recalculation

Value

data.frame (tibble) with normalized data

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.