plot_MA: Plots MA plot of differential expression analysis

In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations

Plots MA plot of differential expression analysis

Description

Crates simple MA plot, with log10(mean expression) on the X-axis and log2(fold_change) on the Y-axis

Usage

plot_MA(input_data, transcript_id_column, labels = FALSE, nlabels = 10, ...)

Arguments

input_data	a table with output from calculate_diff_exp_binom
transcript_id_column	column used for transcript id
labels	show point labels using ggrepel
nlabels	number of labels to show
...	parameters passed to .basic_aesthetics function (scale_x_limit_low = NA, scale_x_limit_high = NA, scale_y_limit_low = NA, scale_y_limit_high = NA, color_palette = "Set1",plot_title=NA)

Value

ggplot object

smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.