calculate_pca: Calculates PCA using polya predictions or counts
In smaegol/nanotail: Analysis and visualisation of Nanopolish-based polyA lengths estimations
calculate_pca R Documentation
Calculates PCA using polya predictions or counts
Description
Needs polyA predictions table summarized by summarize_polya function, using "sample_name" as summary_factors
Usage
calculate_pca(
polya_data_summarized,
parameter = "polya_median",
transcript_id_column = "transcript"
)
Arguments
polya_data_summarized
summarized polyA predictions. Generate use summarize_polya
parameter
parameter used for PCA calculation. One of: polya_median,polya_mean,polya_gm_mean,counts
transcript_id_column
column which respresnrt transcript id
Value
pca object
smaegol/nanotail documentation built on June 29, 2024, 12:35 a.m.
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| calculate_pca | R Documentation |
Calculates PCA using polya predictions or counts
Description
Needs polyA predictions table summarized by summarize_polya function, using "sample_name" as summary_factors
Usage
calculate_pca(
polya_data_summarized,
parameter = "polya_median",
transcript_id_column = "transcript"
)
Arguments
polya_data_summarized |
summarized polyA predictions. Generate use summarize_polya |
parameter |
|
transcript_id_column |
column which respresnrt transcript id |
Value
pca object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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