Man pages for smaegol/nanotail
Analysis and visualisation of Nanopolish-based polyA lengths estimations
| annotate_with_annotables | Annotate polyA predictions using annotables |
| annotate_with_biomart | Title |
| annotate_with_org_packages | Title |
| calculate_diff_exp_binom | Performs differential expression analysis |
| calculate_pca | Calculates PCA using polya predictions or counts |
| calculate_polya_stats | Calculates basic statistics for polya lengths |
| calculate_scaling_vector_for_virutal_gel | Calculates scaling vector for virtual gel plotting |
| dot-basic_aesthetics | Title |
| dot-kruskal_polya | Compute Kruskal-Wallis test on single poly(A) data |
| dot-polya_stats | Calculates polyA statistics for single group of reads (for... |
| getmode | Function calculating statistical mode of given vector. |
| get_nanopolish_processing_info | Get information about nanopolish processing |
| gm_mean | Calculates geometric mean |
| kruskal_polya | Compute Kruskal-Wallis test on poly(A) data |
| nanoTailApp | wrapper for NanoTail Shiny interface |
| nanotail_ggplot2_theme | Default theme for ggplot2-based plots in the NanoTail package |
| normalize_counts_to_depth | Normalize counts to sequencingdepth |
| pipe | Pipe operator |
| plot_annotations_comparison_boxplot | Title |
| plot_counts_scatter | Title |
| plot_MA | Plots MA plot of differential expression analysis |
| plot_nanopolish_qc | Plot Nanopolish polya QC |
| plot_polya_boxplot | Plots boxplot of estimated polya lengths |
| plot_polya_distribution | Plots polya distribution as ndensity plot |
| plot_polyA_PCA | PCA biplot |
| plot_polya_violin | Plots violin plot of estimated polya lengths, other version |
| plot_quantiles | Plot quantiles |
| plot_virtual_gel | Title |
| plot_volcano | Plots volcano plot of differential expression analysis |
| read_polya_multiple | Reads multiple nanopolish polyA predictions at once |
| read_polya_single | Read Single Nanopolish polyA preditions from file |
| remove_failed_reads | Removes reads which failed during Nanopolish polya processing |
| spread_multiple | Spread multiple columns |
| stat_median_line | Helper function for calculating median stat for... |
| subsample_table | Subsample a date frame |
| summarize_polya | Summarizes input polya table |
| summarize_polya_per_transcript | Summarize poly(A) data per transcript |
