API for tgrimes/dnapath2
Differential Network Analysis Using Gene Pathways
| Global functions | |
|---|---|
| [.dnapath_list | Man page |
| [<-.dnapath_list | Man page |
| `[.dnapath_list` | Source code |
| `[<-.dnapath_list` | Source code |
| `c.dnapath_list` | Source code |
| c.dnapath_list | Man page |
| combine_overlapping_pathways | Man page Source code |
| d_edgesC | Man page Source code |
| d_genesC | Man page Source code |
| d_pathwayC | Man page Source code |
| dnapath | Man page Source code |
| dnapath2 | Man page |
| dnapath2-package | Man page |
| fdr | Man page Source code |
| filter_pathways | Man page Source code |
| get_alpha_level | Source code |
| get_alpha_level2 | Source code |
| get_min_alpha | Man page Source code |
| get_number_of_tests | Source code |
| get_perm_needed | Source code |
| get_reactome_pathways | Man page Source code |
| head.dnapath_list | Man page Source code |
| order.dnapath_list | Man page Source code |
| plot.dnapath | Man page Source code |
| print.dnapath | Man page Source code |
| print.dnapath_list | Man page Source code |
| rename_genes | Man page Source code |
| rev.dnapathpath_list | Man page Source code |
| run_aracne | Man page Source code |
| run_bc3net | Man page Source code |
| run_c3net | Man page Source code |
| run_clr | Man page Source code |
| run_corr | Man page Source code |
| run_dwlasso | Man page Source code |
| run_genie3 | Man page Source code |
| run_glasso | Man page Source code |
| run_mrnet | Man page Source code |
| run_pcor | Man page Source code |
| run_silencer | Man page Source code |
| sort.dnapath_list | Man page Source code |
| subset.dnapath_list | Man page Source code |
| summarize_dnw_for_pathway | Man page Source code |
| summarize_edges_for_pathway | Man page Source code |
| summarize_genes | Man page Source code |
| summarize_genes_for_pathway | Man page Source code |
| summarize_pathways | Man page Source code |
| summary.dnapath | Man page Source code |
| summary.dnapath_list | Man page Source code |
| tail.dnapath_list | Man page Source code |
| vector_to_matrix | Man page Source code |
