run_glasso: Wrapper for glasso method

In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways

Description

Conducts co-expression analysis using glasso.

Usage

run_glasso(x, method = c("glasso", "mb", "ct"), criterion = c("ric",
  "stars"), verbose = FALSE, ...)

Arguments

x	The n by p matrix of counts.
method	Graph estimation method. Should be either "mb", "glasso", or "ct". Default is "glasso".
criterion	Model selection criterion. Should be either "ric" or "stars". Default is "ric".
verbose	boolean indicating whether trace information during estimation and selection should be printed. Default is FALSE.

Value

A p by p matrix of association scores.

tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.