filter_pathways: Remove pathways with non-significant DC scores.
In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways
Description
Usage
Arguments
Value
Description
Remove pathways with non-significant DC scores.
Usage
1
filter_pathways(results, alpha_pathway = NULL)
Arguments
alpha_pathway
Threshold for pathway p-values to determine significance.
If NULL, defaults to 0.05 or the minimum possible threshold (based on the
number of permutatiosn that were run).
x
A 'dnapath_list' object.
Value
A 'dnapath_list' object containing only those pathways with differential
connectivity p-values below alpha.
tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.
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Description Usage Arguments Value
Description
Remove pathways with non-significant DC scores.
Usage
1 | filter_pathways(results, alpha_pathway = NULL)
|
Arguments
alpha_pathway |
Threshold for pathway p-values to determine significance. If NULL, defaults to 0.05 or the minimum possible threshold (based on the number of permutatiosn that were run). |
x |
A 'dnapath_list' object. |
Value
A 'dnapath_list' object containing only those pathways with differential
connectivity p-values below alpha.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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