summary.dnapath: Summary function for 'dnapath' object.

In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways

Description

Summary function for 'dnapath' object.

Usage

## S3 method for class 'dnapath'
summary(x, by_gene = TRUE, alpha = NULL, ...)

Arguments

x	A 'dnapath' object.
by_gene	If TRUE, summarizes the differential network analysis by genes; otherwise, summarizes by gene-gene interactions.
alpha	Threshold for p-values to determine significance; defaults to 1 and returns all results. If 'by_gene' is FALSE, then 'alpha' is used to filter edges. If 'by_gene' is TRUE, then 'alpha' is used to filter genes.
...	Additional arguments are passed into summarize_pathways (default) or summarize_genes_over_pathways (if by_gene is TRUE).

Value

Summarizes the differential network analysis result.

tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.