run_pcor: Wrapper for partial correlations from corpcor

In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways

Description

Conducts co-expression analysis using full partial correlations; these are computed using the shrinkage approach for covariance estimation from the corpcor package.

Usage

run_pcor(x, transformation = NULL, verbose = FALSE, ...)

Arguments

x	The n by p matrix of counts.
verbose	If true, progress messages will be printed from pcor.shrink().
threshold	Cutoff for significant associations. If NULL, all correlations are returned. Otherwise, correlations of magnitude at or below this threshold are set to zero.

Value

A p by p matrix of association scores.

tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.