summarize_pathways: Summarize the differential connectivity of pathways.
In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways
Description
Usage
Arguments
Value
Description
Summarize the differential connectivity of pathways.
Usage
1
summarize_pathways(results, alpha_pathway = NULL, alpha_gene = NULL)
Arguments
results
A 'dnapath_list' object.
alpha_pathway
Threshold for p-values of pathway DC scores.
If NULL (or 1), results for all pathways are shown.
alpha_gene
Threshold for p-values of gene DC scores. Used to determine
the number of genes that are differentially connected within each pathway.
If NULL,
defaults to 0.05 or the minimum possible threshold (based on the
number of permutatiosn that were run).
Value
A tibble summarizing the differential connectivity of genes in
the pathway.
tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.
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Description Usage Arguments Value
Description
Summarize the differential connectivity of pathways.
Usage
1 | summarize_pathways(results, alpha_pathway = NULL, alpha_gene = NULL)
|
Arguments
results |
A 'dnapath_list' object. |
alpha_pathway |
Threshold for p-values of pathway DC scores. If NULL (or 1), results for all pathways are shown. |
alpha_gene |
Threshold for p-values of gene DC scores. Used to determine the number of genes that are differentially connected within each pathway. If NULL, defaults to 0.05 or the minimum possible threshold (based on the number of permutatiosn that were run). |
Value
A tibble summarizing the differential connectivity of genes in the pathway.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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