summarize_dnw_for_pathway: Summarize differential connectivity scores for a pathway
In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways
Description
Usage
Arguments
Value
Description
Summarize differential connectivity scores for a pathway
Usage
1
summarize_dnw_for_pathway(results, alpha = 0.1, monotonized = FALSE)
Arguments
results
The results from performing dnapath() on a single pathway.
alpha
The desired significance level. DC scores with p-values below
this threshold will be set to zero.
monotonized
If true, monotonized (i.e. step-down) p-values from the
permutation test will be used.
Value
The p by p differential network, with nonzero entries containing
the significant DC scores.
tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.
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Description Usage Arguments Value
Description
Summarize differential connectivity scores for a pathway
Usage
1 | summarize_dnw_for_pathway(results, alpha = 0.1, monotonized = FALSE)
|
Arguments
results |
The results from performing |
alpha |
The desired significance level. DC scores with p-values below this threshold will be set to zero. |
monotonized |
If true, monotonized (i.e. step-down) p-values from the permutation test will be used. |
Value
The p by p differential network, with nonzero entries containing the significant DC scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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