run_corr: Wrapper for correlation co-expression
In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways
Description
Usage
Arguments
Value
Description
Conducts co-expression analysis using correlation for association measure.
Usage
1
Arguments
x
The n by p matrix of counts.
threshold
Cutoff for significant associations. If NULL, all correlations
are returned. Otherwise, correlations of magnitude at or below this threshold are
set to zero.
method
The method used to compute correlations. Should be either "pearson"
or "spearman". The default is Spearman, which provides
the more conservative estimation of associations.
Value
A p by p matrix of association scores.
tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.
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Description Usage Arguments Value
Description
Conducts co-expression analysis using correlation for association measure.
Usage
1 |
Arguments
x |
The n by p matrix of counts. |
threshold |
Cutoff for significant associations. If NULL, all correlations are returned. Otherwise, correlations of magnitude at or below this threshold are set to zero. |
method |
The method used to compute correlations. Should be either "pearson" or "spearman". The default is Spearman, which provides the more conservative estimation of associations. |
Value
A p by p matrix of association scores.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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