plot.dnapath: Plot function for 'dnapath' object.

In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways

Description

Plot function for 'dnapath' object.

Usage

## S3 method for class 'dnapath'
plot(x, alpha = NULL, monotonized = FALSE, ...)

Arguments

x	A 'dnapath' object.
alpha	Threshold for p-values to infer differentially connected edges. If NULL (the default) then no edges are removed from the plot.
monotonized	If TRUE, monotonized (i.e. step-down) p-values from the permutation test will be used.
...	Additional arguments are passed into the plotting function plot_network.

Value

Plots the differential network and returns the graph object. See plot_network for details.

tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.