get_reactome_pathways: Obtain reactome pathways
In tgrimes/dnapath2: Differential Network Analysis Using Gene Pathways
Description
Usage
Arguments
Value
View source: R/get_reactome_pathways.R
Description
Obtain reactome pathways
Usage
1
get_reactome_pathways(species, overlap_limit = 0.9)
Arguments
species
A string, for example "Homo sapiens" or "Mus musculus",
indicating the species to use.
overlap_limit
(Optional) Any pathways that have an overlap
greater than overlap_limit are combined. Set to NULL to disable
this option.
Value
A named list of vectors. Each vector corresponds to a Reactome pathway
and contains the entrezgene IDs of the genes in that pathway.
tgrimes/dnapath2 documentation built on May 21, 2020, 5:53 p.m.
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Description Usage Arguments Value
View source: R/get_reactome_pathways.R
Description
Obtain reactome pathways
Usage
1 | get_reactome_pathways(species, overlap_limit = 0.9)
|
Arguments
species |
A string, for example "Homo sapiens" or "Mus musculus", indicating the species to use. |
overlap_limit |
(Optional) Any pathways that have an overlap greater than overlap_limit are combined. Set to NULL to disable this option. |
Value
A named list of vectors. Each vector corresponds to a Reactome pathway and contains the entrezgene IDs of the genes in that pathway.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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