Files in trichelab/velocessor

The world's dumbest single-cell RNA velocity calculator and loader

NEWS.md R/add_densmap.R R/add_plate_metrics.R R/add_static_trace.R R/add_tpm.R R/add_umap_embedding.R R/add_velo_trace.R R/adt_seqs_from_hdf5.R R/adts_from_hdf5.R R/basilisk.R R/biotypes.R R/cellrank.R R/check_sce.R R/cluster_velo_txis.R R/compute_velocity.R R/dedupe_velo_txis.R R/diff_AB.R R/downsample_txis.R R/drop_doublets.R R/fetch_ensembl.R R/find_doublets.R R/find_dupe_txis.R R/find_eligible_cells.R R/fit_mixtures.R R/fix_cells.R R/fix_gencode.R R/fix_rownames.R R/get_AB.R R/get_ensembl_genes.R R/get_ensembl_transcripts.R R/get_gencode_ensembl.R R/get_gencode_genes.R R/get_gencode_species.R R/get_gencode_transcripts.R R/get_sample_from_barcode.R R/harmonize_velo_txis.R R/import_droplet_txis.R R/import_kallisto_txis.R R/import_plate_txis.R R/import_velo_txis.R R/infercnv.R R/izar_transform.R R/label_cells.R R/load_mtx.R R/make_plate_plot.R R/make_storm_trimmer.R R/make_tximeta.R R/make_velo_index.R R/merge_sces.R R/nonzero.R R/plot_ABC.R R/plot_densities.R R/plot_eligible_cells.R R/plot_features.R R/plot_velo.R R/process_velo_txis.R R/project_onto_umap.R R/relevel_sequentially.R R/rescale_dimred.R R/sample_clusters.R R/scdb.R R/split_SE.R R/veload.R R/velocity_assays.R R/velocity_metadata.R README.md man/add_densmap.Rd man/add_plate_metrics.Rd man/add_static_trace.Rd man/add_tpm.Rd man/add_umap_embedding.Rd man/add_velo_trace.Rd man/adt_seqs_from_hdf5.Rd man/adts_from_hdf5.Rd man/biotypes.Rd man/cellrank.Rd man/check_sce.Rd man/cluster_velo_txis.Rd man/compute_velocity.Rd man/dedupe_velo_txis.Rd man/diff_AB.Rd man/downsample_txis.Rd man/fetch_ensembl.Rd man/find_doublets.Rd man/find_dupe_txis.Rd man/find_eligible_cells.Rd man/fit_mixtures.Rd man/fix_cells.Rd man/fix_gencode.Rd man/fix_rownames.Rd man/get_AB.Rd man/get_ensembl_genes.Rd man/get_ensembl_transcripts.Rd man/get_gencode_ensembl.Rd man/get_gencode_genes.Rd man/get_gencode_species.Rd man/get_gencode_transcripts.Rd man/get_sample_from_barcode.Rd man/harmonize_velo_txis.Rd man/import_droplet_txis.Rd man/import_kallisto_txis.Rd man/import_plate_txis.Rd man/import_velo_txis.Rd man/infercnv.Rd man/izar_transform.Rd man/label_cells.Rd man/load_mtx.Rd man/make_plate_plot.Rd man/make_storm_trimmer.Rd man/make_tximeta.Rd man/make_velo_index.Rd man/merge_sces.Rd man/nonzero.Rd man/plot_ABC.Rd man/plot_densities.Rd man/plot_eligible_cells.Rd man/plot_features.Rd man/plot_velo.Rd man/process_velo_txis.Rd man/project_onto_umap.Rd man/relevel_sequentially.Rd man/rescale_dimred.Rd man/sample_clusters.Rd man/scdb.Rd man/split_SE.Rd man/veload.Rd man/velocity_assays.Rd man/velocity_metadata.Rd tests/testthat.R tests/testthat/helper.R tests/testthat/test-something.R