Files in wguo-research/scCancer
A package for automated processing of single cell RNA-seq data in cancer
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/cnvFunction.R
R/scAnnotation.R
R/scCombination.R
R/scStatistics.R
R/utils.R
README.md
inst/rds/cellTypeTemplates.RDS
inst/rds/cnvRef_Data-HM.RDS
inst/rds/cnvRef_Data-boneMarrow-MS.RDS
inst/rds/cnvRef_SNN-HM.RDS
inst/rds/cnvRef_SNN-boneMarrow-MS.RDS
inst/rmd/SoupX.Rmd
inst/rmd/cellCalling.Rmd
inst/rmd/cellCycle.Rmd
inst/rmd/cellInteraction.Rmd
inst/rmd/cellTypePred.Rmd
inst/rmd/contamination.Rmd
inst/rmd/diffExpr.Rmd
inst/rmd/doublet.Rmd
inst/rmd/exprProgram.Rmd
inst/rmd/filterCell.Rmd
inst/rmd/filterGene.Rmd
inst/rmd/geneSets.Rmd
inst/rmd/main-scAnno.Rmd
inst/rmd/main-scAnnoComb.Rmd
inst/rmd/main-scStat.Rmd
inst/rmd/malign-comb.Rmd
inst/rmd/malignancy.Rmd
inst/rmd/stemness.Rmd
inst/rmd/umap.Rmd
inst/txt/PairsLigRec.txt
inst/txt/cellCycle-genes.txt
inst/txt/diss-genes.txt
inst/txt/gene-chr-hg19.txt
inst/txt/gene-chr-hg38.txt
inst/txt/gene-chr-mm10.txt
inst/txt/gene.chr.txt
inst/txt/hallmark-pathways.txt
inst/txt/hg-mm-HomologyGenes.txt
inst/txt/pcbc-stemsig.tsv
man/Read10Xdata.Rd
man/checkAnnoArguments.Rd
man/checkCombArguments.Rd
man/checkStatArguments.Rd
man/clusterBarPlot.Rd
man/extractFiles.Rd
man/genAnnoReport.Rd
man/genStatReport.Rd
man/generate10Xdata.Rd
man/getCellTypeColor.Rd
man/getDefaultColors.Rd
man/getDefaultGeneSets.Rd
man/getDefaultMarkers.Rd
man/getTumorCluster.Rd
man/ggplot_config.Rd
man/markerPlot.Rd
man/plotCellInteraction.Rd
man/plotExprProgram.Rd
man/plotGeneSet.Rd
man/plotMalignancy.Rd
man/plotSeurat.Rd
man/pointDRPlot.Rd
man/predCellType.Rd
man/prepareData.Rd
man/prepareSeurat.Rd
man/runCellClassify.Rd
man/runCellCycle.Rd
man/runCellInteraction.Rd
man/runDoublet.Rd
man/runExprProgram.Rd
man/runGeneSets.Rd
man/runMalignancy.Rd
man/runScAnnotation.Rd
man/runScCombination.Rd
man/runScStatistics.Rd
man/runSeurat.Rd
man/runStemness.Rd
man/runSurvival.Rd
scCancer.Rproj
vignettes/.gitignore
vignettes/scCancer.Rmd
