wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data

Functions and objects (S3) to import, export, summarize, visualize and analyze quantification results of DIA MS proteomic experiments. This package is used to genrate QC reports, and to suggest data scaling and transformations to improve data quality and reduce batch effects. This package is part of a workflow to analyse data independent aquisition (DIA) SWATH quantificaton experiments in the R. Aebersold IMSB/ETH Zurich, comprising of OpenSWATH, pyProphet, and MSstats.

install.packages("remotes")
remotes::install_github("wolski/imsbInfer")