correctIntRTv1.msexperiment: correct intensity over RT for entire msexperiment
In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data
Description
Usage
Arguments
Value
Note
Author(s)
Examples
Description
correct intensity over RT for entire msexperiment
Usage
1
2
## S3 method for class 'msexperiment'
correctIntRTv1(obj, k = 501, ...)
Arguments
obj
- object of class msexperiment
k
- smoothing with
...
(unused)
Value
msexperiment object with RT normalized intensities
Note
reorders all entries in experiment according to RT, finds sample with fewest NA's if there are many picks that one
with largest median as reference.
Author(s)
Witold Wolski wolski@gmail.com
Examples
1
2
data(SDat)
SDatal = correctIntRTv1(SDat,plot=F)
wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.
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Description Usage Arguments Value Note Author(s) Examples
Description
correct intensity over RT for entire msexperiment
Usage
1 2 | ## S3 method for class 'msexperiment'
correctIntRTv1(obj, k = 501, ...)
|
Arguments
obj |
- object of class msexperiment |
k |
- smoothing with |
... |
(unused) |
Value
msexperiment object with RT normalized intensities
Note
reorders all entries in experiment according to RT, finds sample with fewest NA's if there are many picks that one with largest median as reference.
Author(s)
Witold Wolski wolski@gmail.com
Examples
1 2 | data(SDat)
SDatal = correctIntRTv1(SDat,plot=F)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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