wolski/imsbInfer
Visualization, normalization and QC of proteomics SWATH-MS data

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analyzeDuplicatedProteinsTOP: analyse duplicated protein peptides - same protein id...

analyzeDuplicatedProteinsTOP: analyse duplicated protein peptides - same protein id...
In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data

Description Usage Arguments See Also Examples

View source: R/analyzeDuplicatedPeptides.R

Description

analyse duplicated protein peptides - same protein id different peptide take top peptides

Usage

1
analyzeDuplicatedProteinsTOP(data, maxpep = 3, countmax = 1000)

Arguments

data

an object of class msexperiment

maxpep

maximum number of peptides to compare

countmax

maximum number of duplicate comparisons

See Also

getListOfDuplicated analyzeDuplicatedPeptides

analyzeDuplicated

Examples

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data(SDat)
res = analyzeDuplicatedProteinsTOP(SDat)
res[1,]
hist(res$cor)
plot(res$medianRTDiff,res$cor)
#same for proteins
rownames = as.character(SDat$pepinfo$ProteinName)

wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.

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