getListOfDuplicatedOrderedByIntensity: get a list of duplicates (their indices) ordered by intensity

In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data

Description

get a list of duplicates (their indices) ordered by intensity

Usage

getListOfDuplicatedOrderedByIntensity(rownames, intensities)

Arguments

rownames	rownames
intensities	intensities

Examples

nam = c('a','a','b','e','c','d','f','e','e')
intens = c(1,2 , 1 , 1 , 2 , 3 , 4 , 2 , 0)
res= getListOfDuplicatedOrderedByIntensity(nam,intens)
nam[res[[1]]]
intens[res[[1]]]
nam[res[[2]]]
intens[res[[2]]]
data(SDat)
rownames = SDat$pepinfo$ProteinName
intens = apply(SDat$Intensity,1,mean)
res = getListOfDuplicatedOrderedByIntensity(rownames, apply(SDat$Intensity,1,mean))
res
intens[res[[81]]]
rownames[res[[81]]]

wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.