selectTopPeptidesPerProtein: this function selects the top x peptides / protein
In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data
Description
Usage
Arguments
Examples
View source: R/transitionAnalysis.R
Description
this function selects the top x peptides / protein
Usage
1
selectTopPeptidesPerProtein(msexp, peptop = 3)
Arguments
msexp
data.frame with
peptop
how many top peptides
Examples
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data(SDat)
rownames(SDat$pepinfo)
table(table(SDat$pepinfo$ProteinName))
x = selectTopPeptidesPerProtein(SDat,peptop=3)
table(table(x$pepinfo$ProteinName))
stopifnot(rownames(x$pepinfo)[1:10]==rownames(x$Intensity)[1:10])
stopifnot( length(unique(SDat$pepinfo$ProteinName)) == length(unique(x$pepinfo$ProteinName)) )
wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.
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Description Usage Arguments Examples
View source: R/transitionAnalysis.R
Description
this function selects the top x peptides / protein
Usage
1 | selectTopPeptidesPerProtein(msexp, peptop = 3)
|
Arguments
msexp |
data.frame with |
peptop |
how many top peptides |
Examples
1 2 3 4 5 6 7 | data(SDat)
rownames(SDat$pepinfo)
table(table(SDat$pepinfo$ProteinName))
x = selectTopPeptidesPerProtein(SDat,peptop=3)
table(table(x$pepinfo$ProteinName))
stopifnot(rownames(x$pepinfo)[1:10]==rownames(x$Intensity)[1:10])
stopifnot( length(unique(SDat$pepinfo$ProteinName)) == length(unique(x$pepinfo$ProteinName)) )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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