wolski/imsbInfer
Visualization, normalization and QC of proteomics SWATH-MS data

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analyzeDuplicatedPeptides: analyse duplicated peptides - same peptide different charge

analyzeDuplicatedPeptides: analyse duplicated peptides - same peptide different charge
In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data

Description Usage Arguments See Also Examples

View source: R/analyzeDuplicatedPeptides.R

Description

analyse duplicated peptides - same peptide different charge

Usage

1
analyzeDuplicatedPeptides(data, countmax = 1000)

Arguments

data

msExperiment

countmax

maximum number of duplicate comparisons

See Also

getListOfDuplicated analyzeDuplicatedProteins

Examples

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data(SDat)
res = analyzeDuplicatedPeptides(SDat,countmax= 20)
res[1,]
hist(res$cor)
plot(res$medianRTDiff,res$cor)
#same for proteins
rownames = as.character(SDat$pepinfo$ProteinName)

wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.

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