Description Usage Arguments Value Author(s) Examples
correct intensity over RT for entire msexperiment
1 2 3 4 |
obj |
reference data - ordered by retention time |
data |
to correct |
rto |
retention time (ordered) |
plot |
if TRUE create debug plot |
k |
smoothing with |
FUN |
running function - for equal median use runmed, for equal max use i.e. runFUN(x,k=300,max) |
... |
unused |
corrected data
Witold Wolski wolski@gmail.com
1 2 3 4 5 | data(SDat)
experiment = removeDecoys(SDat)
experiment = orderByRT(experiment)
cor = correctIntRTv1(experiment$Intensity[,1], experiment$Intensity[,2],experiment$RT,k=51)
cor = correctIntRTv1(experiment$Intensity[,1], experiment$Intensity[,2],experiment$RT,k=51,FUN=function(x,k=k){print(k);runFun(x,k=k,mean)})
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