correctIntRTv2.default: correct Intensity RT using func, i.e. runrobscale (default)

In wolski/imsbInfer: Visualization, normalization and QC of proteomics SWATH-MS data

Description

correct Intensity RT using func, i.e. runrobscale (default)

Usage

## Default S3 method:
correctIntRTv2(obj, rto, k = 501, scale = FALSE,
  plot = TRUE, func = runrobscale, ...)

Arguments

obj	to correct
rto	retention time
k	smoothing with (see runmed)
scale	should scaling be applied
plot	show diagnostic plot
func	function to apply for scaling see runrobscale
...	(unused)

Value

corrected data

Author(s)

Witold Wolski

See Also

runrobscale runTICscale

Examples

res = c(rnorm(1000,0,1),rnorm(2000,0,3))
res[sample(1:length(res),100)] = NA
rto = as.numeric(1:length(res))
res2 = correctIntRTv2(res ,rto )

wolski/imsbInfer documentation built on March 27, 2021, 11:39 p.m.