API for wolski/imsbInfer
Visualization, normalization and QC of proteomics SWATH-MS data
| Global functions | |
|---|---|
| .aggregatepeptide | Source code |
| .syncrownames | Source code |
| SDat | Man page |
| aggregatePeptides | Man page Source code |
| aggregateProteins | Man page Source code |
| analyzeDuplicated | Man page Source code |
| analyzeDuplicatedPeptides | Man page Source code |
| analyzeDuplicatedProteins | Man page Source code |
| analyzeDuplicatedProteinsTOP | Man page Source code |
| compPeptideCorrelations | Man page Source code |
| convert2MSstats | Man page Source code |
| convert2msExperiment | Man page Source code |
| convertLF2Wideformat | Man page Source code |
| correctIntRTv1 | Man page Source code |
| correctIntRTv1.default | Man page Source code |
| correctIntRTv1.matrix | Man page Source code |
| correctIntRTv1.msexperiment | Man page Source code |
| correctIntRTv2 | Man page Source code |
| correctIntRTv2.default | Man page Source code |
| correctIntRTv2.msexperiment | Man page Source code |
| dim.msexperiment | Man page Source code |
| dimnames.msexperiment | Man page Source code |
| feature_alignment_requant | Man page |
| filterByScore | Man page Source code |
| getListOfDuplicated | Man page Source code |
| getListOfDuplicatedOrderedByIntensity | Man page Source code |
| getUniqueEntries | Man page Source code |
| imsbInfer | Man page |
| imsbInfer-package | Man page |
| keepRTRange | Man page Source code |
| keepRTRange.msexperiment | Man page Source code |
| loadTransitonsMSExperiment | Man page Source code |
| mycolnames | Man page Source code |
| orderByKey | Man page Source code |
| orderByKey.msexperiment | Man page Source code |
| orderByRT | Man page Source code |
| orderByRT.msexperiment | Man page Source code |
| pairsDifference | Man page Source code |
| pairsRatio | Man page Source code |
| plotPairCors | Man page Source code |
| prepareDF | Man page Source code |
| randomPairs | Man page Source code |
| read2msExperiment | Man page Source code |
| read2msExperiment.data.frame | Man page Source code |
| read2msExperiment.default | Man page Source code |
| removeDecoys | Man page Source code |
| removeDecoys.msexperiment | Man page Source code |
| removeSample | Man page Source code |
| removeSamples | Man page Source code |
| reordercolumns | Man page Source code |
| selectTopFragmentsPerPeptide | Man page Source code |
| selectTopPeptidesPerProtein | Man page Source code |
| setRequantToNA | Man page Source code |
| setRequantToNA.msexperiment | Man page Source code |
| subset | Man page |
| subset.msexperiment | Man page Source code |
| summaryCors | Man page Source code |
| transitions2wide | Man page Source code |
