Files in wolski/imsbInfer

Visualization, normalization and QC of proteomics SWATH-MS data

R/aggregateMSexperiment.R R/analyzeDuplicatedPeptides.R R/convert2msstats.r R/correctIntRT.R R/correctIntRTv2.R R/filterbyScore.R R/hello.R R/loadTransitionsMSExperiment.R R/plotting.R R/swathDataUtils.R R/transitionAnalysis.R README.md ext/workflows/RunWorkflows.R man/SDat.Rd man/aggregatePeptides.Rd man/aggregateProteins.Rd man/analyzeDuplicated.Rd man/analyzeDuplicatedPeptides.Rd man/analyzeDuplicatedProteins.Rd man/analyzeDuplicatedProteinsTOP.Rd man/compPeptideCorrelations.Rd man/convert2MSstats.Rd man/convert2msExperiment.Rd man/convertLF2Wideformat.Rd man/correctIntRTv1.Rd man/correctIntRTv1.default.Rd man/correctIntRTv1.matrix.Rd man/correctIntRTv1.msexperiment.Rd man/correctIntRTv2.default.Rd man/correctIntRTv2.msexperiment.Rd man/dim.msexperiment.Rd man/dimnames.msexperiment.Rd man/feature_alignment_requant.Rd man/filterByScore.Rd man/getListOfDuplicated.Rd man/getListOfDuplicatedOrderedByIntensity.Rd man/getUniqueEntries.Rd man/imsbInfer.Rd man/keepRTRange.Rd man/keepRTRange.msexperiment.Rd man/loadTransitonsMSExperiment.Rd man/mycolnames.Rd man/orderByKey.Rd man/orderByKey.msexperiment.Rd man/orderByRT.Rd man/orderByRT.msexperiment.Rd man/pairsDifference.Rd man/pairsRatio.Rd man/plotPairCors.Rd man/prepareDF.Rd man/randomPairs.Rd man/read2msExperiment.data.frame.Rd man/read2msExperiment.default.Rd man/removeDecoys.Rd man/removeDecoys.msexperiment.Rd man/removeSample.Rd man/removeSamples.Rd man/reordercolumns.Rd man/selectTopFragmentsPerPeptide.Rd man/selectTopPeptidesPerProtein.Rd man/setRequantToNA.Rd man/setRequantToNA.msexperiment.Rd man/subset.msexperiment.Rd man/summaryCors.Rd man/transitions2wide.Rd runrox2.R vignettes/runAnalyseSWATH.R