compareReference: Compare array data with references (e.g., tissue, cell types)

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Compare array data with references (e.g., tissue, cell types)

Description

Compare array data with references (e.g., tissue, cell types)

Usage

compareReference(
  ref,
  betas = NULL,
  stop.points = NULL,
  query_width = 0.3,
  show_sample_names = FALSE
)

Arguments

ref	the reference beta values in SummarizedExperiment. One can download them from the sesameData package. See examples.
betas	matrix of betas for the target sample This argument is optional. If not given, only the reference will be shown.
stop.points	stop points for the color palette. Default to blue, yellow.
query_width	the width of the query beta value matrix
show_sample_names	whether to show sample names (default: FALSE)

Value

grid object that contrast the target sample with references.

Examples

sesameDataCache() # if not done yet
compareReference(sesameDataGet("MM285.tissueSignature"))
sesameDataGet_resetEnv()

zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.