convertProbeID: Convert Probe ID

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Convert Probe ID

Description

Convert Probe ID

Usage

convertProbeID(
  x,
  target_platform,
  source_platform = NULL,
  mapping = NULL,
  target_uniq = TRUE,
  include_new = FALSE,
  include_old = FALSE,
  return_mapping = FALSE
)

Arguments

x	source probe IDs
target_platform	the platform to take the data to
source_platform	optional source platform
mapping	a liftOver mapping file. Typically this file contains empirical evidence whether a probe mapping is reliable. If given, probe ID-based mapping will be skipped. This is to perform more stringent probe ID mapping.
target_uniq	whether the target Probe ID should be kept unique.
include_new	if true, include mapping of added probes
include_old	if true, include mapping of deleted probes
return_mapping	return mapping table, instead of the target IDs.

Value

mapped probe IDs, or mapping table if return_mapping = T

zwdzwd/sesame documentation built on Nov. 11, 2024, 9:33 a.m.