getAFTypeIbySumAlleles: Get allele frequency treating type I by summing alleles
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
getAFTypeIbySumAlleles R Documentation
Get allele frequency treating type I by summing alleles
Description
Takes a SigDF as input and returns a numeric vector containing
extra allele frequencies based on Color-Channel-Switching (CCS) probes.
If no CCS probes exist in the SigDF, then an numeric(0) is
returned.
Usage
getAFTypeIbySumAlleles(sdf, known.ccs.only = TRUE)
Arguments
sdf
SigDF
known.ccs.only
consider only known CCS probes
Value
beta values
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
af <- getAFTypeIbySumAlleles(sdf)
zwdzwd/sesame documentation built on Jan. 8, 2025, 4:50 a.m.
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| getAFTypeIbySumAlleles | R Documentation |
Get allele frequency treating type I by summing alleles
Description
Takes a SigDF as input and returns a numeric vector containing
extra allele frequencies based on Color-Channel-Switching (CCS) probes.
If no CCS probes exist in the SigDF, then an numeric(0) is
returned.
Usage
getAFTypeIbySumAlleles(sdf, known.ccs.only = TRUE)
Arguments
sdf |
|
known.ccs.only |
consider only known CCS probes |
Value
beta values
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
af <- getAFTypeIbySumAlleles(sdf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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