imputeBetas: Impute of missing data of specific platform

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Impute of missing data of specific platform

Description

Impute of missing data of specific platform

Usage

imputeBetas(
  betas,
  platform = NULL,
  BPPARAM = SerialParam(),
  celltype = NULL,
  sd_max = 999
)

Arguments

betas	named vector of beta values
platform	platform
BPPARAM	use MulticoreParam(n) for parallel processing
celltype	celltype/tissue context of imputation, if not given, will use nearest neighbor to determine.
sd_max	maximum standard deviation in imputation confidence

Value

imputed data, vector or matrix

Examples

betas = openSesame(sesameDataGet("EPIC.1.SigDF"))
sum(is.na(betas))
betas2 = imputeBetas(betas, "EPIC")
sum(is.na(betas2))

zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.