detectionPnegEcdf: Detection P-value based on ECDF of negative control
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
detectionPnegEcdf R Documentation
Detection P-value based on ECDF of negative control
Description
The function takes a SigDF as input, computes detection p-value
using negative control probes' empirical distribution and returns a new
SigDF with an updated mask slot.
Usage
detectionPnegEcdf(sdf, return.pval = FALSE, pval.threshold = 0.05)
Arguments
sdf
a SigDF
return.pval
whether to return p-values, instead of a
masked SigDF
pval.threshold
minimum p-value to mask
Value
a SigDF, or a p-value vector if return.pval is TRUE
Examples
sdf <- sesameDataGet("EPIC.1.SigDF")
sum(sdf$mask)
sum(detectionPnegEcdf(sdf)$mask)
zwdzwd/sesame documentation built on June 24, 2024, 6:34 p.m.
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| detectionPnegEcdf | R Documentation |
Detection P-value based on ECDF of negative control
Description
The function takes a SigDF as input, computes detection p-value
using negative control probes' empirical distribution and returns a new
SigDF with an updated mask slot.
Usage
detectionPnegEcdf(sdf, return.pval = FALSE, pval.threshold = 0.05)
Arguments
sdf |
a |
return.pval |
whether to return p-values, instead of a
masked |
pval.threshold |
minimum p-value to mask |
Value
a SigDF, or a p-value vector if return.pval is TRUE
Examples
sdf <- sesameDataGet("EPIC.1.SigDF")
sum(sdf$mask)
sum(detectionPnegEcdf(sdf)$mask)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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