imputeBetasByGenomicNeighbors: Impute missing data based on genomic neighbors.

View source: R/impute.R

imputeBetasByGenomicNeighborsR Documentation

Impute missing data based on genomic neighbors.

Description

Impute missing data based on genomic neighbors.

Usage

imputeBetasByGenomicNeighbors(
  betas,
  platform = NULL,
  BPPARAM = SerialParam(),
  max_neighbors = 3,
  max_dist = 10000
)

Arguments

betas

named vector of beta values

platform

platform

BPPARAM

use MulticoreParam(n) for parallel processing

max_neighbors

maximum neighbors to use for dense regions

max_dist

maximum distance to count as neighbor

Value

imputed data, vector or matrix

Examples

betas = openSesame(sesameDataGet("EPICv2.8.SigDF")[[1]])
sum(is.na(betas))
betas2 = imputeBetasByGenomicNeighbors(betas, "EPICv2")
sum(is.na(betas2))


zwdzwd/sesame documentation built on June 2, 2024, 9:47 a.m.