API for zwdzwd/sesame
Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Global functions
BetaValueToMValue Man page Source code
Hv.age2response Source code
Hv.response2age Source code
IG Man page
IG,SigSet-method Man page
IG<- Man page
IG<-,SigSet-method Man page
II Man page
II,SigSet-method Man page
II<- Man page
II<-,SigSet-method Man page
IR Man page
IR,SigSet-method Man page
IR<- Man page
IR<-,SigSet-method Man page
MValueToBetaValue Man page Source code
SNPcheck Man page Source code
SigSet Man page Source code
SigSet-class Man page
SigSetList Man page Source code
SigSetList-class Man page
SigSetList-methods Man page
SigSetListFromIDATs Man page Source code
SigSetListFromPath Man page Source code
SignalSet Man page
_PACKAGE Man page
backgroundCorrCh1 Source code
backgroundCorrectionNoobCh1 Source code
binSignals Man page Source code
bisConversionControl Man page Source code
buildControlMatrix450k Man page Source code
chipAddressToSignal Man page Source code
cleanRefSet Source code
cnSegmentation Man page Source code
ctl Man page
ctl,SigSet-method Man page
ctl<- Man page
ctl<-,SigSet-method Man page
detectionPnegEcdf Man page Source code
detectionPnegNorm Man page Source code
detectionPnegNormGS Man page Source code
detectionPnegNormTotal Man page Source code
detectionPoobEcdf Man page Source code
dichotomize Source code
diffRefSet Man page Source code
double.transform.f Source code
dyeBiasCorr Man page Source code
dyeBiasCorrMostBalanced Man page Source code
dyeBiasCorrTypeINorm Man page Source code
dyeBiasCorrTypeINormG2R Source code
dyeBiasCorrTypeINormMpU Source code
dyeBiasCorrTypeINormR2G Source code
errFunc Source code
estimateCellComposition Man page Source code
estimateLeukocyte Man page Source code
getAFTypeIbySumAlleles Man page Source code
getBetas Man page Source code
getBetasTypeIbySumChannels Man page Source code
getBinCoordinates Man page Source code
getNormCtls Man page Source code
getProbesByGene Man page Source code
getProbesByRegion Man page Source code
getProbesByTSS Man page Source code
getRefSet Man page Source code
getSexInfo Man page Source code
getg0 Source code
inferEthnicity Man page Source code
inferSex Man page Source code
inferSexKaryotypes Man page Source code
initialize,SigSet-method Man page
leftRightMerge1 Source code
makeExampleSeSAMeDataSet Man page Source code
makeExampleTinyEPICDataSet Man page Source code
meanIntensity Man page Source code
negControls Source code
noob Man page Source code
noobsb Man page Source code
normExpSignal Source code
oobG Man page
oobG,SigSet-method Man page
oobG<- Man page
oobG<-,SigSet-method Man page
oobR Man page
oobR,SigSet-method Man page
oobR<- Man page
oobR<-,SigSet-method Man page
openSesame Man page Source code
optimizeCellComposition Source code
pkgTest Source code
plotCytoBand Source code
predictAge Source code
predictAgeHorvath353 Man page Source code
predictAgePheno Man page Source code
predictAgeSkinBlood Man page Source code
pval Man page
pval,SigSet-method Man page
pval<- Man page
pval<-,SigSet-method Man page
readIDAT1 Source code
readIDATpair Man page Source code
reopenSesame Man page Source code
searchIDATprefixes Man page Source code
segmentBins Man page Source code
sesame Man page
sesame-package Man page
sesamize Man page Source code
show,SigSet-method Man page
show,SigSetList-method Man page
signalR6toS4 Man page Source code
smessage Source code
subsetSignal Man page Source code
totalIntensities Man page Source code
totalIntensityZscore Man page Source code
train.model.lm Source code
visualizeGene Man page Source code
visualizeProbes Man page Source code
visualizeRegion Man page Source code
visualizeSegments Man page Source code
zwdzwd/sesame documentation built on Sept. 22, 2018, 5:36 p.m.